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Measuring Haplotype Rarity

Appendix D

Distribution of Deviation Index scores

Class Mid-
pt
12 mkr 25 mkr 37 mkr 67 mkr
CountPct CountPct CountPct CountPct
0-00170 3.40%30.10% 10.00%1 0.10%
0.1-21.5354 7.20%2606.20% 130.30%43 2.20%
2-32.5294 6.00%3949.40% 782.00%129 6.60%
3-43.5 347 7.00%3959.40% 1544.00%258 13.20%
4-54.5243 4.90%445 10.60%2406.30% 298 15.30%
5-65.5332 6.70%4079.70% 3188.30%235 12.00%
6-76.5241 4.90%3929.30% 3388.80%173 8.90%
7-87.5248 5.00%3508.30% 346 9.00%140 7.20%
8-98.5187 3.80%3428.10% 2887.50%80 4.10%
9-109.5253 5.10%2997.10% 2105.50%32 1.60%
10-1111237 4.80%2205.20% 2135.60%10 0.50%
11-1212223 4.50%1663.90% 1804.70%5 0.30%
12-1313350 7.10%1734.10% 1574.10%2 0.10%
13-1414144 2.90%1152.70% 842.20%1 0.10%
14-1515184 3.70%691.60% 581.50%2 0.10%
15-1616191 3.90%671.60% 481.30%2 0.10%
16-1717143 2.90%220.50% 120.30%12 0.60%
17-1818104 2.10%170.40% 120.30%70 3.60%
18-1919143 2.90%90.20% 50.10%97 5.00%
19-202099 2.00%140.30% 30.10%117 6.00%
20-2121116 2.30%40.10% 40.10%105 5.40%
21-222248 1.00%60.10% 30.10%58 3.00%
22-232358 1.20%40.10% 00.00%28 1.40%
23-242430 0.60%40.10% 20.10%15 0.80%
24-252531 0.60%20.00% 00.00%2 0.10%
25-262631 0.60%70.20% 10.00%4 0.20%
26-282744 0.90%30.10% 30.10%3 0.20%
28-302920 0.40%30.10% 441.20%1 0.10%
30-31328 0.20%10.00% 611.60%0 0.00%
31-32336 0.10%10.00% 972.50%2 0.10%
32-33334 0.10%10.00% 852.20%3 0.20%
33-34342 0.00%00.00% 1313.40%3 0.20%
34-35351 0.00%00.00% 1343.50%6 0.30%
35-36362 0.00%00.00% 972.50%4 0.20%
36-37372 0.00%00.00% 1012.60%5 0.30%
37-38376 0.10%10.00% 892.30%2 0.10%
38-40393 0.10%00.00% 842.20%1 0.10%
40-42413 0.10%10.00% 340.90%1 0.10%
42-44434 0.10%00.00% 100.30%1 0.10%
44-46456 0.10%00.00% 60.20%0 0.00%
46-48475 0.10%00.00% 30.10%0 0.00%
48-50494 0.10%00.00% 30.10%0 0.00%
50-706014 0.30%40.10% 621.60%2 0.10%
70-100854 0.10%20.00% 60.20%0 0.00%
>1004201 0.00%10.00% 70.20%0 0.00%
Total4940100% 4204100%3825 100%1953100%