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Y Haplotype Rarity

Appendix A

Projects Included

Names Variants 2000 US Census Project Y participants
Rank Count per 100k< All R1b R1b%
SMITH 1 2,376,206 880.85 1,986 1,221 61.5%
JOHNSON 2 1,857,160 688.44 1,214 663 54.6%
  JOHNSTON 207 128,935 47.80 included above
  JOHNS 656 47,289 17.53
  JOHNSEN 4439 7,381 2.74
  JOHNSTONE 4520 7,227 2.68
WILLIAMS 3 1,534,042 568.66 1,071 825 77.0%
  WILLIAMSON 245 112,216 41.60 included above
  MCWILLIAMS 1628 20,135 7.46
  WILLIAM 1923 17,164 6.36
BROWN 4 1,380,145 1511.62 1,062 726 68.4%
JONES 5 1,362,755 505.17 507 356 70.2%
MILLER  6 1,127,803 418.07 675 469 69.5%
DAVIS 7 1,072,335 397.51      
WILSON   10 783,051 290.27      
ANDERSON  12 762,394 282.62 546 307 56.2%
  ANDERSEN 954 33,508 12.42 included above
  ANDERS 2165 15,375 5.70
TAYLOR  13 720,370 267.04 627 408 65.1%
 
Total    13,365,491 4,954.54 7,688 4,975 64.7%
  4.95%      

R1b Data Set Statistics

Statistic# Markers
Tested
Count4942
Min12
Max111
Avg45.04
St. Devn22.18
Mode37
Median37

Of the 4975 initially thought to be R1b, 33 were later found to be of other haplogroups and rejected from analyses.

Haplogroups & SNPs

Marker Statistics

Markers1
DYS 393
2
DYS 390
3
DYS
19
3.1
DYS
19b
4
DYS 391
5
DYS 385
6
DYS 385b
6.1 DYS 385c7
DYS
426
8
DYS 388
9
DYS 439
10 DYS 389i11 DYS 39212
DYS 389ii
 
Count49424942 494214942 494249422 494249424942 494249424942
Min110 0188 0014 088 10025
Max1527 181814 151814 141517 151633
Avg13.023.9 14.11810.7 11.114.014 12.012.011.9 13.113.129.2
Mode1324 141811 111414 121212 131329
Median1324 141811 111414 121212 131329
St. Devn0.330.77 0.46#N/A0.55 0.490.770 0.230.210.69 0.500.430.71
13 DYS 45814 DYS 459a15 DYS 459b16
DYS
455
17 DYS 45418 DYS 44719 DYS 43720 DYS 44821
DYS
449
22 DYS 464a23 DYS 464b24 DYS 464c25 DYS 464d25.1 DYS 464efg  
Count42034202 420242034203 420342024203 420342024201 4201420128
Min00 000 000 000 00
Max2210 121313 301721 351818 2020
Avg17.18.97 9.810.9911.0 24.914.918.9 29.514.815.2 16.417.1
Mode179 101111 251519 291515 1717
Median179 101111 251519 291515 1617
St. Devn0.9950.35 0.490.320.29 0.820.460.64 1.250.640.63 0.780.81
26 DYS 46027 GATA-H428
YCAII
a
29
YCAII
b
30 DYS 45631 DYS 60732 DYS 57633 DYS 57034
CDY
a
35 CDY
b
36 DYS 44237 DYS 438  
Count38263826 382538253820 380838083808 380838083820 3825
Min00 000 000 000 9
Max1313 242520 182221 434615 14
Avg10.910.9 19.122.815.8 15.017.917.1 36.438.212.0 12.0
Mode1111 192316 151817 363812 12
Median1111 192316 151817 363812 12
St. Devn0.540.61 0.610.851.058 0.641.111.04 1.551.610.74 0.29
38 DYS 53139
DYS 578
40 DYF
395
S1a
41 DYF
395
S1b
42 DYS 59043 DYS 53744 DYS 64145 DYS 47246 DYF
406S1
47 DYS 51148 DYS 42549 DYS 413
a
50 DYS 413
b
51
DYS 557
 
Count19431943 194219421943 194319431943 194319431944 194219421942
Min06 13150 798 890 172111
Max1410 17189 15119 121213 252521
Avg11.019.0 15.016.08.0 10.110.08.0 10.110.011.61 22.6723.116.1
Mode119 15168 10108 101012 232316
Median119 15168 10108 101012 232316
St. Devn0.470.160.24 0.150.340.35 0.170.040.41 0.382.180.78 0.410.64
52 DYS 59453 DYS 43654 DYS 49055
DYS 534
56 DYS 45057 DYS 44458 DYS 48159 DYS 52060 DYS 44661 DYS 61762 DYS 56863 DYS 48764 DYS 57265 DYS 64066 DYS 49267 DYS 565
Count19421942 194219421942 195519421942 195519421942 194219421942 19421463
Min810 10120 900 10100 0010 910
Max1214 142010 152922 161513 161213 1513
Avg10.012.0 12.015.38.0 12.022.320.0 13.112.111.0 13.111.011.1 12.311.9
Mode1012 12158 122220 131211 131111 1212
Median1012 12158 122220 131211 131111 1212
St. Devn0.250.13 0.250.9230.34 0.561.230.77 0.570.310.44 0.560.400.23 0.540.32


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